Databases

PlantGenIE.org

The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species. Currently it includes dedicated web portals for enabling in-depth exploration of poplar, Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the Drupal CMS (Content Management System).

COLOMBOS

COLOMBOS stands for 'COLlection Of Microarrays for Bacterial OrganismS'. It is a web based interface for exploring and analyzing comprehensive organism-specific cross-platform expression compendia of bacterial organisms. Colombos' major features include: 1. Access to expression compendia that combine information from different platforms and experiments (constructed by collecting, homogenizing and formally annotating publicly available microarrays from Gene Expression Omnibus (GEO), and ArrayExpress). 2.

MAGIC

MAGIC stands for 'access portal to a cross-platform gene expression compendium for maize'. It is a web-based interface for exploring and analyzing a comprehensive cross-platform expression compendium of maize.
MAGIC's major features include:

1. Access to an expression compendium that combines information from different platforms and experiments.

2. Integration of information from main curated external databases allowing the user to interactively browse and query the compendia for specific genes, pathways, and more.

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