ReMoDiscovery

Inferring transcriptional module networks from ChIP-chip-, motif- and microarray data.
ReMoDiscovery is an intuitive algorithm to correlate regulatory programs with regulators and corresponding motifs to a set of co-expressed genes. It exploits in a concurrent way three independent data sources: ChIP-chip data, motif information and gene expression profiles.

Resources

Inferring transcriptional module networks from ChIP-chip-, motif- and microarray data. K. Lemmens, T. Dhollander, T. De Bie, P. Monsieurs, K. Engelen, B. Smets, J. Winderickx, B. De Moor, K. Marchal. Genome Biol. 2006; 7(5): R37.
doi:  10.1186/gb-2006-7-5-r37