ViTraM

Software Tool for the Visualization of Transcriptional Modules.
A flexible software platform for visualizing overlapping transcriptional modules in an intuitive way. By visualizing not only the genes and the experiments in which the genes are co-expressed, but also additional properties of the modules such as the regulators and regulatory motifs that are responsible for the observed co-expression, ViTraM can assist in the biological analysis and interpretation of the output of module detection tools.

Resources

H. Sun, K. Lemmens, T. Van den Buckle, K. Engelen, B. De Moor, K. Marchal. "ViTraM: Visualization of Transcriptional Modules" (2009). Bioinformatics, 25(18):2450-2451; doi:10.1093/bioinformatics/btp400.
H. Sun, K. Lemmens, T. Van den Buckle, K. Engelen, B. De Moor, K. Marchal. "Layout and Post-Processing of Transcriptional Modules". IEEE Computer Society, 10.1109/IJCBS.2009.95, 116-121 (2009). In Proceedings of the International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.